You can edit the compensation matrices directly from FlowJo, using the Platform-> Compensate Sample-> Edit/Save Matrix command (from the Platform -> Compensate Sample menu, you can also Remove Compensation).įrom this interface, you can save matrices to disk (so that you can import them into other workspaces), you can create an entirely new matrix from scratch, or you can modify an existing matrix. When you create a new compensation matrix, FlowJo no longer automatically saves it to a file. Starting with FlowJo version 4.5, you can easily change the compensation matrix values. If you are not familiar with the format of the Compensation Matrix, read that page first.
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